ba_markerprofiles_allelematrix_search

Gets markers in matrix format. If the format parameter is set to either csv or tsv the returned object is always a tibble object. If the format parameter is 'json' (default) the rclass parameter can be used to as in other functions.

ba_markerprofiles_allelematrix_search(con = NULL, markerprofileDbId = "",
  markerDbId = "", expandHomozygotes = FALSE, unknownString = "-",
  sepPhased = "|", sepUnphased = "/", format = "json", page = 0,
  pageSize = 10000, rclass = "tibble")

Arguments

con

brapi connection object
markerprofileDbId

character vector; default ''
markerDbId

character vector; default ''
expandHomozygotes

logical; default false
unknownString

chaaracter; default: '-'
sepPhased

character; default: '|'
sepUnphased

character; default: '/'
format

character; default: json; other: csv, tsv
page

integer; default: 0
pageSize

integer; default 1000
rclass

character; default: tibble

Value

data.frame

Note

The handling of long-running responses via asynch status messages is not yet implemented.

References

github

See also

Other markerprofiles: ba_markerprofiles_details, ba_markerprofiles_search

Other genotyping: ba_genomemaps_data_range, ba_genomemaps_data, ba_genomemaps_details, ba_genomemaps, ba_germplasm_attributes, ba_germplasm_markerprofiles, ba_germplasm_search, ba_germplasmattributes_categories, ba_germplasmattributes_details, ba_germplasmattributes, ba_markerprofiles_details, ba_markerprofiles_search, ba_markers_details, ba_markers_search

Examples

if (interactive()) {
  library(brapi)
  # Need to connect to a database with genetic data

  # con <- ba_db()$xxxxx

  # ba_markerprofiles_allelematrix_search(con = con, ...)

}